24091 choice_anch_BThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
24091	chr_9	choice_anch_B	1169180	1173183	+	choice_anch_B

Synonyms

NCBI ID	Ensembl Genomes exon ID
7446987	Thaps24091.8, Thaps24091.1, Thaps24091.5, Thaps24091.4, Thaps24091.11, Thaps24091.3, Thaps24091.2, Thaps24091.10, Thaps24091.9, Thaps24091.6, Thaps24091.7

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0457

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0248	0.34	3800 40000

Most Highly Correlated Transcripts

22258 PUB 0.9085	4358 hypothetical protein 0.9069	263963 Adaptin_N 0.8993	11371 hypothetical protein 0.897	37638 HrpA 0.8961	4438 ANK 0.8911
23952 hypothetical protein 0.8907	22916 DUF1162 superfamily 0.8907	25048 hypothetical protein 0.8889	12500 SNF2_N 0.8875

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
choice_anch_B		choice-of-anchor B domain; This domain, about 385 amino acids long, can have either of at least two...	-	153.26	2.67E-40	200 - 530	multi-dom	234536

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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