24248 CPSaseII_lrg
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
24248 chr_10 CPSaseII_lrg 987878 993295 + CPSaseII_lrg
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0049
Normalized Mean Residue
Thaps_bicluster_0063
0.47
PRK12999
0.9238
(bd1828) NA
0.8834
hypothetical protein
0.7813
(bd1515) Adenylsuccinate_lyase_2
0.7685
hypothetical protein
0.7498
DHQS
0.7462
NAD_binding_8 superfamily
0.7348
PseudoU_synth_RluCD_like
0.7343
(bd1876) NatB_MDM20 superfamily
0.7285
hypothetical protein
0.7257
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II; This group... cl00020 315.205 1.05E-98 236 - 417 specific 153215
GAT_1 superfamily Type 1 glutamine amidotransferase (GATase1)-like domain; Type 1 glutamine amidotransferase (GATase1... - 315.205 1.05E-98 236 - 417 superfamily 260141
CPSase_L_D2 Carbamoyl-phosphate synthase L chain, ATP binding domain; Carbamoyl-phosphate synthase catalyses... cl17255 296.906 1.17E-91 567 - 768 specific 190425
ATP-grasp_4 superfamily ATP-grasp domain; This family includes a diverse set of enzymes that possess ATP-dependent... - 95.8316 1.28E-21 1159 - 1341 superfamily 266590
CPSase_sm_chain Carbamoyl-phosphate synthase small chain, CPSase domain; The carbamoyl-phosphate synthase domain is... cl03056 216.086 2.37E-64 59 - 197 specific 198165
CPSase_sm_chain superfamily Carbamoyl-phosphate synthase small chain, CPSase domain; The carbamoyl-phosphate synthase domain is... - 216.086 2.37E-64 59 - 197 superfamily 261567
CPSase_L_D3 Carbamoyl-phosphate synthetase large chain, oligomerisation domain; Carbamoyl-phosphate synthase... cl19748 163.389 6.04E-46 858 - 990 specific 198164
CPSase_L_D3 superfamily Carbamoyl-phosphate synthetase large chain, oligomerization domain; Carbamoyl-phosphate synthase... - 163.389 6.04E-46 858 - 990 superfamily 268101
MGS-like superfamily MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which... - 93.5182 8.45E-22 1428 - 1552 superfamily 260295
ATP-grasp_4 superfamily ATP-grasp domain; This family includes a diverse set of enzymes that possess ATP-dependent... - 95.8316 1.28E-21 1159 - 1341 superfamily 266590
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available
KEGG description KEGG Pathway
Not available Not available
GO:0003824 GO:0004086 GO:0005524 GO:0006807 GO:0005737 GO:0006526 GO:0019856 GO:0008152 GO:0016874 GO:0009058 -

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

NA

Details: 
NA
GO Category: 
NA

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

nitrogen compound metabolic process

Details: 
The chemical reactions and pathways involving organic or inorganic compounds that contain nitrogen, including (but not limited to) nitrogen fixation, nitrification, denitrification, assimilatory/dissimilatory nitrate reduction and the interconversion of nitrogenous organic matter and ammonium.
GO Category: 
BP

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC

arginine biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of arginine, 2-amino-5-(carbamimidamido)pentanoic acid.
GO Category: 
BP

pyrimidine nucleobase biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of pyrimidine nucleobases, 1,3-diazine, organic nitrogenous bases.
GO Category: 
BP

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

ligase activity

Details: 
Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
GO Category: 
MF

biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
GO Category: 
BP
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