24323 RNase_PH superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
24323 chr_11a RNase_PH superfamily 320916 322241 - RNase_PH superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7443290 Thaps24323.2, Thaps24323.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0230

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0079
 0.38

Most Highly Correlated Transcripts

4372

hypothetical protein
0.8929

13308

PLN02948
0.891

261893

Ofd1_CTDD
0.8896

25359

hypothetical protein
0.8876

4517

hypothetical protein
0.8839

34357

Fcf2
0.8836

bd1806

(bd1806) AAT_I superfamily
0.8828

6835

DUF947
0.8822

21973

G-patch
0.88

1692

hypothetical protein
0.8798

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RNase_PH superfamily RNase PH-like 3'-5' exoribonucleases; RNase PH-like 3'-5'... - 140 1.04E-38 34 - 370 superfamily 261591
PRK04282 exosome complex RNA-binding protein Rrp42; Provisional - 111.507 2.67E-28 39 - 366 multi-dom 235268

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 244526 Not available Not available Not available AT1G60080.1 529521

KEGG

KEGG description KEGG Pathway
RNA degradation map03018

GO Terms

GO:0000175 GO:0003723 GO:0006396 GO:0004534 GO:0016896 -

GO:0000175

3'-5'-exoribonuclease activity

Details: 
Catalysis of the sequential cleavage of mononucleotides from a free 3' terminus of an RNA molecule.
GO Category: 
MF

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0006396

RNA processing

Details: 
Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO Category: 
BP

GO:0004534

5'-3' exoribonuclease activity

Details: 
Catalysis of the sequential cleavage of mononucleotides from a free 5' terminus of an RNA molecule.
GO Category: 
MF

GO:0016896

exoribonuclease activity, producing 5'-phosphomonoesters

Details: 
Catalysis of the hydrolysis of ester linkages within ribonucleic acids by removing nucleotide residues from the 3' or 5' end to yield 5' phosphomonoesters.
GO Category: 
MF

Add comment

Log in to post comments