261893 Ofd1_CTDD
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
261893 chr_3 Ofd1_CTDD 1742013 1744081 + Ofd1_CTDD

Synonyms

NCBI ID Ensembl Genomes exon ID
7445319 Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0222

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0233
 0.34

Most Highly Correlated Transcripts

4372

hypothetical protein
0.9534

bd1877

(bd1877) NA
0.9303

19158

GRX_PICOT_like
0.9088

5806

TIM_phosphate_binding superfamily
0.9074

20877

Ubiq_cyt_C_chap
0.9038

25359

hypothetical protein
0.9038

21305

hypothetical protein
0.9031

24217

hypothetical protein
0.9019

21929

COG0116
0.9

269710

NADB_Rossmann superfamily
0.8971

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Ofd1_CTDD superfamily Oxoglutarate and iron-dependent oxygenase degradation C-term; Ofd1 is a prolyl 4-hydroxylase-like 2... - 229.548 2.42E-70 323 - 591 superfamily 256100
Ofd1_CTDD superfamily Oxoglutarate and iron-dependent oxygenase degradation C-term; Ofd1 is a prolyl 4-hydroxylase-like 2... - 229.548 2.42E-70 323 - 591 superfamily 256100
P4Hc Prolyl 4-hydroxylase alpha subunit homologues; Mammalian enzymes catalyse hydroxylation of collagen... cl17304 85.5174 2.55E-19 74 - 271 specific 214780
2OG-FeII_Oxy_3 superfamily 2OG-Fe(II) oxygenase superfamily; This family contains members of the 2-oxoglutarate (2OG) and Fe(... - 85.5174 2.55E-19 74 - 271 superfamily 266616

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_12896 PHATRDRAFT_12896 193193 318257 464476 Cre09.g408464.t1.1 Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0016706 GO:0019538 -

GO:0016706

oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Details: 
Catalysis of the reaction: A + 2-oxoglutarate + O2 = B + succinate + CO2. This is an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from 2-oxoglutarate and one other donor, and one atom of oxygen is incorporated into each donor.
GO Category: 
MF

GO:0019538

protein metabolic process

Details: 
The chemical reactions and pathways involving a specific protein, rather than of proteins in general. Includes protein modification.
GO Category: 
BP

Add comment

Log in to post comments