2433 Ion_trans
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
2433 chr_2 Ion_trans 998759 1000191 - Ion_trans

Synonyms

NCBI ID Ensembl Genomes exon ID
7450342 Thaps2433.2, Thaps2433.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0293

Most Highly Correlated Transcripts

267979

HCO3_cotransp superfamily
0.899

40200

TRX_reduct
0.8947

268443

SAICAR_synt_Sc
0.8837

24167

hypothetical protein
0.8832

8376

hypothetical protein
0.8792

3690

AdoMet_MTases
0.8761

24218

hypothetical protein
0.873

22465

PTZ00169
0.8726

1676

hypothetical protein
0.8697

16114

PLN02350
0.8652

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Ion_trans Ion transport protein; This family contains Sodium, Potassium, Calcium ion channels. This family is... - 104.677 2.44E-26 157 - 357 multi-dom 249927

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005261 GO:0006812 GO:0016020 GO:0005509 GO:0005216 GO:0006811 -

GO:0005261

cation channel activity

Details: 
Catalysis of the energy-independent passage of cations across a lipid bilayer down a concentration gradient.
GO Category: 
MF

GO:0006812

cation transport

Details: 
The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

GO:0005509

calcium ion binding

Details: 
Interacting selectively and non-covalently with calcium ions (Ca2+).
GO Category: 
MF

GO:0005216

ion channel activity

Details: 
Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism.
GO Category: 
MF

GO:0006811

ion transport

Details: 
The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

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