24382 PseudoU_synth_RluCD_like
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
24382 chr_11a PseudoU_synth_RluCD_like 709288 711255 + PseudoU_synth_RluCD_like

Synonyms

NCBI ID Ensembl Genomes exon ID
7445407 Thaps24382.3, Thaps24382.2, Thaps24382.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0018

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0128
 0.43

Most Highly Correlated Transcripts

262963

HMPP_kinase
0.844

4463

PAP2_like superfamily
0.8135

261882

Thioredoxin_like superfamily
0.7933

3379

hypothetical protein
0.7888

5099

DUF3119 superfamily
0.7848

262537

(SELB) SelB_euk
0.7846

3733

hypothetical protein
0.7837

23427

hypothetical protein
0.7827

37934

GRX_PICOT_like
0.7816

21585

Zip superfamily
0.7797

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PseudoU_synth_RluCD_like Pseudouridine synthase, RsuA/RluD family; This group is comprised of eukaryotic, bacterial and... cl00130 67.3625 3.62E-13 240 - 481 specific 211346
PseudoU_synth superfamily Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to... - 67.3625 3.62E-13 240 - 481 superfamily 260207

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available 288604 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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