262963 HMPP_kinase
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
262963 chr_6 HMPP_kinase 1451818 1453808 - HMPP_kinase

Synonyms

NCBI ID Ensembl Genomes exon ID
7442738 Thaps262963.2, Thaps262963.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0026

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0163
 0.38

Most Highly Correlated Transcripts

36669

TPT
0.8731

31829

CBS_like
0.8729

268592

VDE superfamily
0.8702

261400

NA
0.8694

268908

Trans_IPPS_HH
0.8667

16075

tpt
0.8648

268324

60KD_IMP
0.8643

bd1192

(bd1192) Acyl_ACP_Desat
0.8631

30701

PRK05279
0.8593

37934

GRX_PICOT_like
0.8565

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two... cl00192 243.95 1.84E-75 80 - 381 specific 238574
ribokinase_pfkB_like superfamily ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including... - 243.95 1.84E-75 80 - 381 superfamily 260247
TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in... cl17186 173.088 4.98E-50 461 - 659 specific 238317
TIM_phosphate_binding superfamily TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an... - 173.088 4.98E-50 461 - 659 superfamily 266538
PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase - 229.27 8.24E-67 80 - 659 multi-dom 215486

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_47293 PHATRDRAFT_47293 153126 320126 102278 Not available AT1G22940.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004807 GO:0008152 GO:0004152 GO:0006207 GO:0004789 GO:0009228 -

GO:0004807

triose-phosphate isomerase activity

Details: 
Catalysis of the reaction: D-glyceraldehyde 3-phosphate = glycerone phosphate.
GO Category: 
MF

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0004152

dihydroorotate dehydrogenase activity

Details: 
Catalysis of the reaction: (S)-dihydroorotate + A = AH(2) + orotate.
GO Category: 
MF

GO:0006207

'de novo' pyrimidine nucleobase biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of pyrimidine nucleobases, 1,3-diazine, organic nitrogenous bases, beginning with the synthesis of a pyrimidine ring from simpler precursors.
GO Category: 
BP

GO:0004789

thiamine-phosphate diphosphorylase activity

Details: 
Catalysis of the reaction: 4-amino-2-methyl-5-diphosphomethylpyrimidine + 4-methyl-5-(2-phosphoethyl)-thiazole + H(+) = diphosphate + thiamine phosphate.
GO Category: 
MF

GO:0009228

thiamine biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of thiamine (vitamin B1), a water soluble vitamin present in fresh vegetables and meats, especially liver.
GO Category: 
BP

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