24639 EH
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
24639 chr_13 EH 373192 376741 + EH

Synonyms

NCBI ID Ensembl Genomes exon ID
7445744 Thaps24639.1, Thaps24639.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0205

Most Highly Correlated Transcripts

12836

EEP superfamily
0.906

269540

(CHC) Clathrin
0.8953

261908

PLN02889
0.8952

2145

hypothetical protein
0.8942

22107

hypothetical protein
0.8934

22799

O-FucT_like
0.8913

24686

hypothetical protein
0.8892

23450

hypothetical protein
0.8881

9880

SGNH_hydrolase superfamily
0.8853

263509

mutl
0.8847

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
EH superfamily Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal... - 59.5407 7.76E-11 206 - 268 superfamily 238009
EH superfamily Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal... - 59.5407 7.76E-11 206 - 268 superfamily 238009
EH superfamily Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal... - 59.5407 7.76E-11 206 - 268 superfamily 238009
EH Eps15 homology domain; Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF)... - 80.0139 1.14E-17 195 - 284 multi-dom 197477

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_42442 PHATRDRAFT_42442 241535 Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004535 -

GO:0004535

poly(A)-specific ribonuclease activity

Details: 
Catalysis of the exonucleolytic cleavage of poly(A) to 5'-AMP.
GO Category: 
MF

Add comment

Log in to post comments