269540 (CHC) Clathrin
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
269540 chr_10 (CHC) Clathrin 1033770 1040102 - Clathrin

Synonyms

NCBI ID Ensembl Genomes exon ID
7449343 Thaps269540.3, Thaps269540.2, Thaps269540.4, Thaps269540.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0203

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0137
 0.33

Most Highly Correlated Transcripts

24639

EH
0.8953

24862

hypothetical protein
0.8921

12836

EEP superfamily
0.8914

11438

hypothetical protein
0.8898

23616

Peptidase_A22B superfamily
0.8891

269060

Arginase_HDAC superfamily
0.8848

4704

LPLAT_AAK14816-like
0.8758

33859

pntA
0.8735

261908

PLN02889
0.8731

9388

hypothetical protein
0.8718

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Clathrin Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of... cl19570 78.0358 3.74E-16 986 - 1137 specific 250019
Clathrin superfamily Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of... - 78.0358 3.74E-16 986 - 1137 superfamily 267923
Clathrin_H_link superfamily Clathrin-H-link; This short domain is found on clathrins, and often appears on proteins directly... - 107.646 3.72E-27 357 - 421 superfamily 258113
Clathrin_H_link superfamily Clathrin-H-link; This short domain is found on clathrins, and often appears on proteins directly... - 107.646 3.72E-27 357 - 421 superfamily 258113
Clathrin Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of... cl19570 78.0358 3.74E-16 986 - 1137 specific 250019
Clathrin superfamily Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of... - 78.0358 3.74E-16 986 - 1137 superfamily 267923
CLH Clathrin heavy chain repeat homology; Clathrin heavy chain repeat homology. cl19570 84.6331 1.93E-18 687 - 823 specific 128594
Clathrin superfamily Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of... - 78.0358 3.74E-16 986 - 1137 superfamily 267923
Clathrin Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of... cl19570 78.0358 3.74E-16 986 - 1137 specific 250019
Clathrin superfamily Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of... - 78.0358 3.74E-16 986 - 1137 superfamily 267923

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_54801 PHATRDRAFT_54801 262284 216560 466469 Cre02.g101400.t1.2 AT3G08530.1 350735

KEGG

KEGG description KEGG Pathway
Endocytosis map04144

GO Terms

GO:0030125 -

GO:0030125

clathrin vesicle coat

Details: 
A clathrin coat found on a vesicle.
GO Category: 
CC

Add comment

Log in to post comments