24733 COG3899Thalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
24733	chr_13	COG3899	951148	955820	-	COG3899

Synonyms

NCBI ID	Ensembl Genomes exon ID
7450524	Thaps24733.1, Thaps24733.5, Thaps24733.4, Thaps24733.3, Thaps24733.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0420

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0119	0.42	8.5 8.5

Most Highly Correlated Transcripts

bd415 (bd415) arom_aa_hydroxylase superfamily 0.9444	bd1934 (bd1934) NA 0.9299	bd643 (bd643) NA 0.9029	bd690 (bd690) NA 0.9001	bd1841 (bd1841) CAP10 superfamily 0.8953	bd410 (bd410) HNHc 0.8818
bd1839 (bd1839) NA 0.8569	bd1756 (bd1756) NA 0.8553	bd1840 (bd1840) NA 0.8549	bd1849 (bd1849) NA 0.8509

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
AAA_16		AAA ATPase domain; This family of domains contain a P-loop motif that is characteristic of the AAA...	cl18944	62.8653	3.83E-11	412 - 614	specific	257559
AAA superfamily		The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an...	-	62.8653	3.83E-11	412 - 614	superfamily	267297
COG3899		Predicted ATPase [General function prediction only]	-	243.845	7.10E-67	412 - 1242	multi-dom	226415

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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