24901 (MTS2_2) PRK11893
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
24901 chr_14 (MTS2_2) PRK11893 765300 767111 + PRK11893

Synonyms

NCBI ID Ensembl Genomes exon ID
7441810 Thaps24901.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0041

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0090
 0.39

Most Highly Correlated Transcripts

ThpsCp134

(rpl34) ribosomal protein L34
0.9103

6610

hypothetical protein
0.8994

ThpsCp135

(secA) preprotein translocase subunit SecA
0.8816

12899

AAA
0.8736

bd211

(bd211) Maf_Ham1 superfamily
0.8702

264184

PLN00049
0.8697

ThpsCp101

(rpl22) ribosomal protein L22
0.8695

ThpsCp115

(rps13) ribosomal protein S13
0.8678

ThpsCp118

(rpl13) ribosomal protein L13
0.8666

ThpsCp110

(rpl6) ribosomal protein L6
0.8656

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
MetRS_core catalytic core domain of methioninyl-tRNA synthetases; Methionine tRNA synthetase (MetRS) catalytic... cl00015 511.692 4.04E-179 63 - 395 specific 173907
nt_trans superfamily nucleotidyl transferase superfamily; nt_trans (nucleotidyl transferase) This superfamily includes... - 511.692 4.04E-179 63 - 395 superfamily 260139
Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases; This domain is found in methionyl tRNA... cl12020 133.384 6.51E-37 404 - 532 specific 153411
Anticodon_Ia_like superfamily Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains; This domain is... - 133.384 6.51E-37 404 - 532 superfamily 264512
PRK11893 methionyl-tRNA synthetase; Reviewed - 807.953 0 62 - 570 multi-dom 237012

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_29029 PHATRDRAFT_29029 265545 69835 71449 Cre12.g487100.t1.2 AT3G55400.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004812 GO:0005524 GO:0006418 GO:0004825 GO:0006431 -

GO:0004812

aminoacyl-tRNA ligase activity

Details: 
Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0006418

tRNA aminoacylation for protein translation

Details: 
The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
GO Category: 
BP

GO:0004825

methionine-tRNA ligase activity

Details: 
Catalysis of the reaction: ATP + L-methionine + tRNA(Met) = AMP + diphosphate + L-methionyl-tRNA(Met).
GO Category: 
MF

GO:0006431

methionyl-tRNA aminoacylation

Details: 
The process of coupling methionine to methionyl-tRNA, catalyzed by methionyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.
GO Category: 
BP

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