2495 Cupin_7 superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
2495	chr_2	Cupin_7 superfamily	1138872	1139619	-	Cupin_7 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7444659	Thaps2495.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0449

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0024	0.39

Most Highly Correlated Transcripts

3071 NA 0.9225	20405 GRX_GRXh_1_2_like 0.8747	37585 MECDP_synthase 0.8658	36669 TPT 0.8509	262807 Peptidase_S9 superfamily 0.8503	6784 hypothetical protein 0.8445
261400 NA 0.8365	9263 hypothetical protein 0.8353	26635 Aa_trans superfamily 0.8307	268592 VDE superfamily 0.8269

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Cupin_7 superfamily		ChrR Cupin-like domain; Members of this family are part of the cupin superfamily. This family...	-	61.4173	9.88E-13	111 - 200	superfamily	193446

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	196349	124913	196318	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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