25097 PRK05427Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
25097	chr_16a	PRK05427	63959	65490	-	PRK05427

Synonyms

NCBI ID	Ensembl Genomes exon ID
7449962	Thaps25097.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0014

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0239	0.34	160 920

Most Highly Correlated Transcripts

23291 hypothetical protein 0.8987	574 PRK05444 0.8904	36669 TPT 0.886	36235 p450 superfamily 0.8737	38575 carb_red_sniffer_like_SDR_c 0.8663	268592 VDE superfamily 0.8598
22362 (KCS1) CHS_like 0.8577	7583 DUF1995 superfamily 0.8544	5380 DUF1092 superfamily 0.8541	270373 hypothetical protein 0.8534

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
DHHA2 superfamily		DHHA2 domain; This domain is often found adjacent to the DHH domain pfam01368 and is called DHHA2...	-	85.2547	6.70E-20	280 - 412	superfamily	251561
DHHA2 superfamily		DHHA2 domain; This domain is often found adjacent to the DHH domain pfam01368 and is called DHHA2...	-	85.2547	6.70E-20	280 - 412	superfamily	251561
PRK05427		putative manganese-dependent inorganic pyrophosphatase; Provisional	-	230.484	2.68E-71	102 - 414	multi-dom	235458

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	200154	Not available	244377	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0005737 GO:0016462 -

Add comment

Log in to post comments