25120 U3_assoc_6 superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
25120 chr_16a U3_assoc_6 superfamily 166796 169354 + U3_assoc_6 superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7449982 Thaps25120.3, Thaps25120.1, Thaps25120.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0230

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0141
 0.18

Most Highly Correlated Transcripts

22441

hypothetical protein
0.9526

261145

Lactamase_B superfamily
0.9494

32158

NOC3
0.9392

bd1807

(bd1807) RRS1 superfamily
0.9389

14890

Cupin_8 superfamily
0.9297

25434

PRK00142
0.9261

34027

SrmB
0.9257

23336

SRP40_C superfamily
0.9249

22417

Sun
0.9221

5666

Las1 superfamily
0.921

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
U3_assoc_6 superfamily U3 small nucleolar RNA-associated protein 6; This is a family of U3 nucleolar RNA-associated... - 124.688 1.31E-30 1 - 318 superfamily 267866

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_45871 PHATRDRAFT_45871 236247 134593 Not available Cre10.g442000.t1.2 Not available 311464

KEGG

KEGG description KEGG Pathway
Ribosome biogenesis in eukaryotes map03008

GO Terms

GO:0005622 GO:0006396 -

GO:0005622

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

GO:0006396

RNA processing

Details: 
Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO Category: 
BP

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