22417 SunThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
22417	chr_4	Sun	1885417	1887488	+	Sun

Synonyms

NCBI ID	Ensembl Genomes exon ID
7443769	Thaps22417.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0230

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0091	0.31	0.00000003 0.31

Most Highly Correlated Transcripts

21959 hypothetical protein 0.9544	bd1667 (bd1667) Mpp10 0.9455	22499 TrmA 0.9311	25120 U3_assoc_6 superfamily 0.9221	34176 AdoMet_MTases superfamily 0.9202	24429 PRMT5 superfamily 0.9192
22441 hypothetical protein 0.9167	29018 NMD3 0.9167	34021 Methyltrn_RNA_3 0.9159	32158 NOC3 0.9158

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Sun		tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]	-	152.159	5.76E-41	143 - 500	multi-dom	223222

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	207674	169405	114071	Not available	AT5G26180.2	345492

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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