25203 RRM_SF superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
25203	chr_17	RRM_SF superfamily	56425	58422	+	RRM_SF superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7453109	Thaps25203.1, Thaps25203.3, Thaps25203.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0309

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0010	0.38	14000000 370

Most Highly Correlated Transcripts

bd690 (bd690) NA 0.9151	bd1934 (bd1934) NA 0.9026	bd1801 (bd1801) NA 0.9006	bd738 (bd738) NA 0.8983	bd737 (bd737) NA 0.856	bd1806 (bd1806) AAT_I superfamily 0.8305
bd1946 (bd1946) NA 0.8267	bd1959 (bd1959) NA 0.8143	bd735 (bd735) NA 0.8065	bd1790 (bd1790) NA 0.801

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RRM_SF superfamily		RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (...	-	95.8954	2.63E-24	155 - 237	superfamily	266524
COG0724		RNA-binding proteins (RRM domain) [General function prediction only]	-	74.213	4.46E-15	152 - 256	multi-dom	223796

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
mRNA surveillance pathway	map03015

GO Terms

GO:0003676 -

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