25299 PLN02252
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
25299 chr_17 PLN02252 530632 534492 + PLN02252

Synonyms

NCBI ID Ensembl Genomes exon ID
7453080 Thaps25299.3, Thaps25299.1, Thaps25299.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0360

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0109
 0.50

Most Highly Correlated Transcripts

bd1806

(bd1806) AAT_I superfamily
0.8799

20829

HPP
0.8101

27414

(NRT1) 2A0108
0.8081

bd1667

(bd1667) Mpp10
0.8055

bd1946

(bd1946) NA
0.7937

269274

(NRT2) 2A0108
0.7923

20827

hypothetical protein
0.7893

262125

(NIR_2) PLN02431
0.7726

bd930

(bd930) HA
0.7709

bd690

(bd690) NA
0.7679

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an... cl06868 312.194 2.82E-99 659 - 908 specific 99780
FNR_like superfamily Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a... - 312.194 2.82E-99 659 - 908 superfamily 263080
SO_family_Moco superfamily Sulfite oxidase (SO) family, molybdopterin binding domain. This molybdopterin cofactor (Moco)... - 594.746 0 91 - 486 superfamily 260254
Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain; This family includes heme binding domains from a... cl02041 116.143 1.75E-30 554 - 626 specific 249651
Cyt-b5 superfamily Cytochrome b5-like Heme/Steroid binding domain; This family includes heme binding domains from a... - 116.143 1.75E-30 554 - 626 superfamily 261158
PLN02252 nitrate reductase [NADPH] - 1489.17 0 1 - 908 multi-dom 215141

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_54983 PHATRDRAFT_54983 197330 220339 Not available Cre09.g410950.t1.2 AT1G77760.1 337236

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006118 GO:0016491 GO:0009703 -

GO:0006118

NA

Details: 
NA
GO Category: 
NA

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

GO:0009703

nitrate reductase (NADH) activity

Details: 
Catalysis of the reaction: nitrite + NAD+ + H2O = nitrate + NADH + H+.
GO Category: 
MF

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