25610 COG2335
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
25610 chr_20 COG2335 257653 260128 + COG2335

Synonyms

NCBI ID Ensembl Genomes exon ID
7443347 Thaps25610.1, Thaps25610.2, Thaps25610.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0016

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0128
 0.43

Most Highly Correlated Transcripts

270222

0.906

bd738

(bd738) NA
0.8848

bd1801

(bd1801) NA
0.8778

bd690

(bd690) NA
0.8547

bd1877

(bd1877) NA
0.8352

bd1692

(bd1692) NA
0.8349

7335

hypothetical protein
0.8297

bd735

(bd735) NA
0.8208

20909

hypothetical protein
0.8167

bd737

(bd737) NA
0.8164

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Fasciclin Fasciclin domain; This extracellular domain is found repeated four times in grasshopper fasciclin I... cl02663 134.692 1.51E-38 183 - 301 specific 251315
Fasciclin superfamily Fasciclin domain; This extracellular domain is found repeated four times in grasshopper fasciclin I... - 134.692 1.51E-38 183 - 301 superfamily 261399
Fasciclin Fasciclin domain; This extracellular domain is found repeated four times in grasshopper fasciclin I... cl02663 134.692 1.51E-38 183 - 301 specific 251315
Fasciclin superfamily Fasciclin domain; This extracellular domain is found repeated four times in grasshopper fasciclin I... - 134.692 1.51E-38 183 - 301 superfamily 261399
COG2335 Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer... - 145.221 8.81E-42 156 - 306 multi-dom 225214
COG2335 Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer... - 145.221 8.81E-42 156 - 306 multi-dom 225214

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_10261 PHATR_10261 214339 300794 432130 Cre12.g492650.t1.2 Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0007155 -

GO:0007155

cell adhesion

Details: 
The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
GO Category: 
BP

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