2595 RNase_HI_likeThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
2595	chr_2	RNase_HI_like	1382724	1383173	+	RNase_HI_like

Synonyms

NCBI ID	Ensembl Genomes exon ID
7446636	Thaps2595.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0005

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0116	0.38	0.00003 12000

Most Highly Correlated Transcripts

9513 hypothetical protein 0.8934	7160 hypothetical protein 0.8773	6243 Macro superfamily 0.876	261422 (MAP4) MetAP1 0.8722	2973 hypothetical protein 0.8692	1219 PAP_fibrillin superfamily 0.8683
2950 (UroS) HemD 0.8654	10068 hypothetical protein 0.8645	bd758 (bd758) NA 0.8622	3322 hypothetical protein 0.8619

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RNase_HI_like		RNAse HI family that includes archaeal, some bacterial as well as plant RNase HI; Ribonuclease H (...	cl14782	139.915	8.14E-43	7 - 145	specific	260011
RNase_H_like superfamily		Ribonuclease H-like superfamily, including RNase H, HI, HII, HIII, and RNase-like domain IV of...	-	139.915	8.14E-43	7 - 145	superfamily	265450

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_44751	PHATRDRAFT_44751	163778	316537	Not available	Cre06.g272550.t1.2	AT5G51080.3	453462

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0003676 GO:0004523 -

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