25953 (MDH2) PLN00105
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
25953 chr_4 (MDH2) PLN00105 1437634 1439291 + PLN00105

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0021

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0051
 0.39

Most Highly Correlated Transcripts

261400

NA
0.8982

36037

Trypsin_2
0.8713

bd1658

(bd1658) NA
0.8686

37934

GRX_PICOT_like
0.8654

23205

hypothetical protein
0.8558

31829

CBS_like
0.8499

36649

SufE superfamily
0.8466

267948

NAD_binding_8 superfamily
0.8459

29850

PLN03132
0.8442

21789

hypothetical protein
0.8419

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PLN00105 cl00900 515.555 1 - 353 specific 215057
Ldh_2 superfamily Malate/L-lactate dehydrogenase; This family consists of bacterial and archaeal Malate/L-lactate... - 515.555 1 - 353 superfamily 260688

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_54834 PHATRDRAFT_54834 224392 254944 428785 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0008152 GO:0016491 GO:0030060 -

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

GO:0030060

L-malate dehydrogenase activity

Details: 
Catalysis of the reaction: (S)-malate + NAD+ = oxaloacetate + NADH + H+.
GO Category: 
MF

Add comment

Log in to post comments