260768 (HMCS1) PLN02577
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
260768 chr_1 (HMCS1) PLN02577 264266 266028 - PLN02577

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0089

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0164
 0.39

Most Highly Correlated Transcripts

bd668

(bd668) NA
0.9463

262697

hypothetical protein
0.9443

264676

S_TKc
0.9337

bd1078

(bd1078) NA
0.9247

bd624

(bd624) Glyco_transf_34 superfamily
0.9184

bd843

(bd843) NA
0.9181

596

Adaptin_N
0.9111

263934

HepA
0.9109

21274

hypothetical protein
0.9069

bd1893

(bd1893) NA
0.9067

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
init_cond_enzymes "initiating" condensing enzymes are a subclass of decarboxylating condensing... cl09938 224.234 2.35E-68 57 - 420 specific 238423
cond_enzymes superfamily Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating)... - 224.234 2.35E-68 57 - 420 superfamily 263929
PLN02577 hydroxymethylglutaryl-CoA synthase - 721.915 0 57 - 504 multi-dom 178189

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_16649 PHATRDRAFT_16649 185767 201357 415195 Cre16.g678850.t1.1 AT4G11820.2 516045

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0004421 GO:0006084 -

GO:0004421

hydroxymethylglutaryl-CoA synthase activity

Details: 
Catalysis of the reaction: acetoacetyl-CoA + acetyl-CoA + H(2)O = (S)-3-hydroxy-3-methylglutaryl-CoA + CoA + H(+).
GO Category: 
MF

GO:0006084

acetyl-CoA metabolic process

Details: 
The chemical reactions and pathways involving acetyl-CoA, a derivative of coenzyme A in which the sulfhydryl group is acetylated; it is a metabolite derived from several pathways (e.g. glycolysis, fatty acid oxidation, amino-acid catabolism) and is further metabolized by the tricarboxylic acid cycle. It is a key intermediate in lipid and terpenoid biosynthesis.
GO Category: 
BP

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