260786 PTZ00345
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
260786 chr_1 PTZ00345 411860 413153 + PTZ00345

Synonyms

NCBI ID Ensembl Genomes exon ID
7451493 Thaps260786.2, Thaps260786.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0295

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0119
 0.42

Most Highly Correlated Transcripts

bd624

(bd624) Glyco_transf_34 superfamily
0.9402

4108

hypothetical protein
0.9292

bd392

(bd392) DEXDc
0.9106

bd1765

(bd1765) NA
0.872

bd446

(bd446) HrpA
0.8718

bd718

(bd718) PRK10387
0.8625

261719

AdoMet_MTases superfamily
0.8592

bd1777

(bd1777) NA
0.8501

4853

hypothetical protein
0.8484

bd1820

(bd1820) Fasciclin
0.8479

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
NAD_Gly3P_dh_C superfamily NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; NAD-dependent glycerol-3-phosphate... - 158.128 1.76E-46 274 - 413 superfamily 254224
NAD_Gly3P_dh_C superfamily NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; NAD-dependent glycerol-3-phosphate... - 158.128 1.76E-46 274 - 413 superfamily 254224
NAD_Gly3P_dh_N superfamily NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; NAD-dependent glycerol-3-phosphate... - 156.233 1.37E-45 69 - 245 superfamily 250446
NAD_Gly3P_dh_N superfamily NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; NAD-dependent glycerol-3-phosphate... - 156.233 1.37E-45 69 - 245 superfamily 250446
PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional - 420.581 3.84E-145 69 - 413 multi-dom 240373

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_36821 PHATR_36821 278877 298416 427769 Cre10.g421700.t1.2 AT5G40610.1 348148

KEGG

KEGG description KEGG Pathway
Glycerophospholipid metabolism map00564

GO Terms

GO:0005975 GO:0016614 GO:0004367 GO:0006072 GO:0009331 GO:0005737 GO:0016616 GO:0046168 GO:0051287 -

GO:0005975

carbohydrate metabolic process

Details: 
The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO Category: 
BP

GO:0016614

oxidoreductase activity, acting on CH-OH group of donors

Details: 
Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group act as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
GO Category: 
MF

GO:0004367

glycerol-3-phosphate dehydrogenase [NAD+] activity

Details: 
Catalysis of the reaction: sn-glycerol 3-phosphate + NAD+ = glycerone phosphate + NADH + H+.
GO Category: 
MF

GO:0006072

glycerol-3-phosphate metabolic process

Details: 
The chemical reactions and pathways involving glycerol-3-phosphate, a phosphoric monoester of glycerol.
GO Category: 
BP

GO:0009331

glycerol-3-phosphate dehydrogenase complex

Details: 
An enzyme complex that catalyzes the dehydrogenation of sn-glycerol 3-phosphate to form glycerone phosphate.
GO Category: 
CC

GO:0005737

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC

GO:0016616

oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Details: 
Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP.
GO Category: 
MF

GO:0046168

glycerol-3-phosphate catabolic process

Details: 
The chemical reactions and pathways resulting in the breakdown of glycerol-3-phosphate, a phosphoric monoester of glycerol.
GO Category: 
BP

GO:0051287

NAD binding

Details: 
Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
GO Category: 
MF

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