260879 (Tp_Hox5a) regulator [Rayko]
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
260879 chr_1 (Tp_Hox5a) regulator [Rayko] 1116935 1117142 + regulator [Rayko]

Synonyms

NCBI ID Ensembl Genomes exon ID
7446829 Thaps260879.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0261

Most Highly Correlated Transcripts

bd763

(bd763) NA
0.798

bd457

(bd457) NA
0.7952

36972

DnaJ
0.7731

264718

(Tp_Myb1R3) BDP1 superfamily
0.7511

260880

hypothetical protein
0.7444

bd1465

(bd1465) PKc_like superfamily
0.7346

bd1878

(bd1878) NA
0.7305

bd875

(bd875) NA
0.7269

15972

RRM2_SF3B4
0.7241

261357

NAD_binding_8 superfamily
0.7231

Conserved Domains

Not available

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Cre12.g508644.t1.1 Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003677 GO:0003700 GO:0005634 GO:0006355 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0003700

sequence-specific DNA binding transcription factor activity

Details: 
Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

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