261045 PI3Kc_like superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
261045	chr_1	PI3Kc_like superfamily	1970449	1975337	-	PI3Kc_like superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7443156	Thaps261045.7, Thaps261045.2, Thaps261045.5, Thaps261045.4, Thaps261045.9, Thaps261045.6, Thaps261045.10, Thaps261045.1, Thaps261045.3, Thaps261045.8

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0198

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0048	0.39	71000 7300

Most Highly Correlated Transcripts

20865 DUF1162 superfamily 0.9385	261448 PLN02205 0.905	36372 S_TKc 0.9043	29057 P-ATPase-V 0.9017	22138 Sec3_C superfamily 0.9002	21268 zf-CXXC 0.8984
16613 S_TKc 0.8982	268606 TBCC 0.8963	8535 hypothetical protein 0.8948	23450 hypothetical protein 0.8946

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PI3Kc_like superfamily		Phosphoinositide 3-kinase (PI3K)-like family, catalytic domain; The PI3K-like catalytic domain...	-	301.855	1.43E-93	1045 - 1303	superfamily	260202
FATC superfamily		FATC domain; The FATC domain is named after FRAP, ATM, TRRAP C-terminal. The solution structure of...	-	63.2529	3.48E-12	1344 - 1376	superfamily	251190
FATC superfamily		FATC domain; The FATC domain is named after FRAP, ATM, TRRAP C-terminal. The solution structure of...	-	63.2529	3.48E-12	1344 - 1376	superfamily	251190
FAT		FAT domain; The FAT domain is named after FRAP, ATM and TRRAP.	-	129.412	5.49E-32	474 - 846	multi-dom	251189

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_44708	PHATRDRAFT_44708	188901	242534	467327	Cre10.g467200.t1.1	AT5G40820.1	295319

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0016773 -

Add comment

Log in to post comments