26131 PRK13474
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
26131 chr_2 PRK13474 1961661 1962309 + PRK13474

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Thaps26131.2, Thaps26131.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0029

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0288
 0.28

Most Highly Correlated Transcripts

270229

hypothetical protein
0.9912

ThpsCt017

(trnG(ucc))
0.9706

bd218

(bd218) Chloroa_b-bind superfamily
0.9653

bd1387

(bd1387) psbE
0.9652

bd1820

(bd1820) Fasciclin
0.9643

bd1306

(bd1306) NA
0.9572

bd1765

(bd1765) NA
0.9572

976

hypothetical protein
0.9543

bd1304

(bd1304) Ycf4
0.953

ThpsCp019

(psbT) photosystem II protein T
0.9509

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Rieske_cytochrome_b6f Iron-sulfur protein (ISP) component of the b6f complex family, Rieske domain; The Rieske domain is... cl00938 242.656 1.37E-82 55 - 180 specific 239553
Rieske superfamily Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (... - 242.656 1.37E-82 55 - 180 superfamily 260709
PRK13474 cytochrome b6-f complex iron-sulfur subunit; Provisional - 267.673 1.39E-91 13 - 180 multi-dom 237392

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_13358 PHATR_13358 272228 186712 45249 Cre11.g467689.t1.1 AT4G03280.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006118 GO:0008121 GO:0016020 GO:0045285 GO:0016491 GO:0009496 -

GO:0006118

NA

Details: 
NA
GO Category: 
NA

GO:0008121

ubiquinol-cytochrome-c reductase activity

Details: 
Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: CoQH2 + 2 ferricytochrome c = CoQ + 2 ferrocytochrome c + 2 H+.
GO Category: 
MF

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

GO:0045285

NA

Details: 
NA
GO Category: 
NA

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

GO:0009496

plastoquinol--plastocyanin reductase activity

Details: 
Catalysis of the reaction: 2 H(+)[side 1] + 2 oxidized plastocyanin + plastoquinol-1 = 2 H(+)[side 2] + 2 reduced plastocyanin + plastoquinone. This reaction involves the concomitant transfer of 2 H+ ions across a membrane.
GO Category: 
MF

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