261368 ABC_ATPase superfamily
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
261368 chr_2 ABC_ATPase superfamily 990967 993692 + ABC_ATPase superfamily
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0436
Normalized Mean Residue
Thaps_bicluster_0084
0.43
(bd415) arom_aa_hydroxylase superfamily
0.8231
(bd1841) CAP10 superfamily
0.805
(bd410) HNHc
0.7709
(bd833) NA
0.7658
COG3899
0.7618
(bd1756) NA
0.7612
(bd1954) NA
0.7592
(bd1845) NA
0.7505
(bd1839) NA
0.7476
(bd764) NA
0.7423
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 249.408 4.55E-77 494 - 727 superfamily 266551
MutS_III MutS domain III; This domain is found in proteins of the MutS family (DNA mismatch repair proteins... cl17822 146.805 2.66E-39 172 - 484 specific 253074
MutS_III superfamily MutS domain III; This domain is found in proteins of the MutS family (DNA mismatch repair proteins... - 146.805 2.66E-39 172 - 484 superfamily 266862
MUTSd DNA-binding domain of DNA mismatch repair MUTS family; DNA-binding domain of DNA mismatch repair... - 107.77 1.05E-25 191 - 501 multi-dom 214710
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_51916 PHATRDRAFT_51916 253011 259109 Not available Not available AT4G17380.1 487593
KEGG description KEGG Pathway
Not available Not available
GO:0001584 GO:0007186 GO:0016021 GO:0003684 GO:0005524 GO:0006298 GO:0006259 -

NA

Details: 
NA
GO Category: 
NA

G-protein coupled receptor signaling pathway

Details: 
A series of molecular signals that proceeds with an activated receptor promoting the exchange of GDP for GTP on the alpha-subunit of an associated heterotrimeric G-protein complex. The GTP-bound activated alpha-G-protein then dissociates from the beta- and gamma-subunits to further transmit the signal within the cell. The pathway begins with receptor-ligand interaction, or for basal GPCR signaling the pathway begins with the receptor activating its G protein in the absence of an agonist, and ends with regulation of a downstream cellular process, e.g. transcription.
GO Category: 
BP

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

damaged DNA binding

Details: 
Interacting selectively and non-covalently with damaged DNA.
GO Category: 
MF

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

mismatch repair

Details: 
A system for the correction of errors in which an incorrect base, which cannot form hydrogen bonds with the corresponding base in the parent strand, is incorporated into the daughter strand. The mismatch repair system promotes genomic fidelity by repairing base-base mismatches, insertion-deletion loops and heterologies generated during DNA replication and recombination.
GO Category: 
BP

DNA metabolic process

Details: 
Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides.
GO Category: 
BP
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