261615 SpoT
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
261615 chr_2 SpoT 2617280 2619607 - SpoT

Synonyms

NCBI ID Ensembl Genomes exon ID
7452134 Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0422

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0138
 0.36

Most Highly Correlated Transcripts

bd643

(bd643) NA
0.8909

21680

hypothetical protein
0.8739

bd415

(bd415) arom_aa_hydroxylase superfamily
0.8719

bd690

(bd690) NA
0.869

263251

PKc_like superfamily
0.848

bd1954

(bd1954) NA
0.8454

bd1934

(bd1934) NA
0.8346

261087

BioA
0.8199

bd410

(bd410) HNHc
0.8159

bd833

(bd833) NA
0.8148

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
NT_Rel-Spo_like Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases; This... cl11966 98.1882 8.98E-24 613 - 748 specific 143389
Rel-Spo_like superfamily RelA- and SpoT-like ppGpp Synthetases and Hydrolases, catalytic domain; The Rel-Spo superfamily... - 98.1882 8.98E-24 613 - 748 superfamily 264491
SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms /... - 182.45 5.80E-49 474 - 757 multi-dom 223394

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_33947 PHATRDRAFT_33947 177727 193757 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0015969 -

GO:0015969

guanosine tetraphosphate metabolic process

Details: 
The chemical reactions and pathways involving guanine tetraphosphate (5'-ppGpp-3'), a derivative of guanine riboside with four phosphates.
GO Category: 
BP

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