261689 Skp1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
261689 chr_3 Skp1 388447 389258 - Skp1

Synonyms

NCBI ID Ensembl Genomes exon ID
7441757 Thaps261689.1, Thaps261689.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0401

Most Highly Correlated Transcripts

bd415

(bd415) arom_aa_hydroxylase superfamily
0.8882

bd410

(bd410) HNHc
0.8877

bd1954

(bd1954) NA
0.8708

bd1841

(bd1841) CAP10 superfamily
0.8695

bd833

(bd833) NA
0.8556

bd643

(bd643) NA
0.8435

16390

Peptidase_C1A
0.837

15887

STKc_CDK7
0.8222

bd1808

(bd1808) NA
0.8221

261087

BioA
0.8089

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Skp1 superfamily Skp1 family, dimerization domain; Skp1 family, dimerization domain. - 86.4516 3.12E-22 124 - 196 superfamily 250639
Skp1 superfamily Skp1 family, dimerization domain; Skp1 family, dimerization domain. - 86.4516 3.12E-22 124 - 196 superfamily 250639
Skp1_POZ superfamily Skp1 family, tetramerization domain; Skp1 family, tetramerization domain. - 67.3185 5.93E-15 36 - 147 superfamily 266799
SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones] - 80.7584 2.82E-19 36 - 196 multi-dom 227528

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_44151 PHATRDRAFT_44151 271074 197157 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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