261746 PRK00142
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
261746 chr_3 PRK00142 760302 763401 - PRK00142

Synonyms

NCBI ID Ensembl Genomes exon ID
7441714 Thaps261746.1, Thaps261746.2, Thaps261746.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0230

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0268
 0.24

Most Highly Correlated Transcripts

bd1667

(bd1667) Mpp10
0.9676

bd1709

(bd1709) NA
0.9643

36434

DUF1253
0.9341

32395

RNA_pol
0.9334

268455

hypothetical protein
0.9329

2921

RRM_SF
0.9205

25689

hypothetical protein
0.9191

22672

hypothetical protein
0.9189

bd96

(bd96) eIF-3_zeta
0.9176

261270

0.917

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PseudoU_synth superfamily Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to... - 178.978 6.43E-51 675 - 871 superfamily 260207
RHOD superfamily Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese... - 123.073 1.41E-32 193 - 319 superfamily 260205
PRK00142 putative rhodanese-related sulfurtransferase; Provisional - 211.63 2.21E-61 33 - 404 multi-dom 234663

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 149030 Not available Not available Not available Not available 487598

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003723 GO:0006396 GO:0009982 GO:0004730 GO:0016439 -

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0006396

RNA processing

Details: 
Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO Category: 
BP

GO:0009982

pseudouridine synthase activity

Details: 
Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5.
GO Category: 
MF

GO:0004730

pseudouridylate synthase activity

Details: 
Catalysis of the reaction: D-ribose 5-phosphate + uracil = H(2)O + pseudouridine 5'-phosphate.
GO Category: 
MF

GO:0016439

NA

Details: 
NA
GO Category: 
NA

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