2921 RRM_SF
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
2921 chr_2 RRM_SF 2224556 2226290 + RRM_SF

Synonyms

NCBI ID Ensembl Genomes exon ID
7452897 Thaps2921.2, Thaps2921.1, Thaps2921.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0220

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0193
 0.22

Most Highly Correlated Transcripts

bd1709

(bd1709) NA
0.9587

bd1667

(bd1667) Mpp10
0.9549

262018

hypothetical protein
0.9472

21222

SrmB
0.9451

36434

DUF1253
0.9442

29018

NMD3
0.937

32325

ABC_ATPase superfamily
0.936

21050

Ras_like_GTPase superfamily
0.9359

22499

TrmA
0.9336

268596

CBF
0.932

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RRM_SF RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... cl17169 73.1081 5.39E-16 216 - 288 specific 240668
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 73.1081 5.39E-16 216 - 288 superfamily 266524
COG0724 RNA-binding proteins (RRM domain) [General function prediction only] - 76.9094 8.43E-16 125 - 336 multi-dom 223796

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_7426 PHATRDRAFT_7426 163720 216802 58939 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003676 GO:0003677 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

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