261839 SrmB
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
261839 chr_3 SrmB 1278651 1280511 + SrmB

Synonyms

NCBI ID Ensembl Genomes exon ID
7441905 Thaps261839.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0485

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0061
 0.42

Most Highly Correlated Transcripts

4524

DHQS
0.8126

36007

Aldolase_II superfamily
0.8099

36568

COG2119
0.8003

19158

GRX_PICOT_like
0.7996

38890

Mito_carr
0.796

264438

TPR
0.7952

20707

hypothetical protein
0.7945

24631

hypothetical protein
0.7918

262146

Chitin_synth_2
0.7914

36995

LplA
0.786

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 75.352 5.16E-16 341 - 452 superfamily 238034
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 75.352 5.16E-16 341 - 452 superfamily 238034
DUF4217 superfamily Domain of unknown function (DUF4217); This short domain is found at the C-terminus of many helicase... - 72.832 7.47E-16 484 - 545 superfamily 258212
DUF4217 superfamily Domain of unknown function (DUF4217); This short domain is found at the C-terminus of many helicase... - 72.832 7.47E-16 484 - 545 superfamily 258212
SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription /... - 94.4717 1.06E-20 326 - 499 multi-dom 223587

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005524 GO:0008026 GO:0003676 GO:0004386 -

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0008026

ATP-dependent helicase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the unwinding of a DNA or RNA helix.
GO Category: 
MF

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

GO:0004386

helicase activity

Details: 
Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.
GO Category: 
MF

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