262312 CaiB
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
262312 chr_4 CaiB 2053532 2055264 + CaiB

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0355

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0034
 0.54

Most Highly Correlated Transcripts

bd409

(bd409) Snf7 superfamily
0.7822

bd895

(bd895) NA
0.7734

bd1877

(bd1877) NA
0.768

bd616

(bd616) NA
0.7678

bd938

(bd938) PBP2_NikA_DppA_OppA_like superfamily
0.7552

bd453

(bd453) Mito_carr
0.742

11075

PRK12999
0.7128

263105

(FCL1) FAA1
0.7028

bd1948

(bd1948) NA
0.7024

bd1891

(bd1891) COG3899
0.6948

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
CaiB Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion] cl19215 395.914 7.52E-135 3 - 424 specific 224717
CoA_transf_3 superfamily CoA-transferase family III; CoA-transferases are found in organisms from all lines of descent. Most... - 395.914 7.52E-135 3 - 424 superfamily 267568

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Cre08.g377150.t1.2 Not available 302387

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0008152 GO:0008111 -

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0008111

alpha-methylacyl-CoA racemase activity

Details: 
Catalysis of the reaction: (2S)-2-methylacyl-CoA = (2R)-2-methylacyl-CoA.
GO Category: 
MF

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