Thaps_bicluster_0034 Residual: 0.54
Thalassiosira pseudonana

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.

Summary

Title Residual Model version Organism
Thaps_bicluster_0034 0.54 Thalassiosira pseudonana

Module Plots

Motifs

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Members

Displaying 1 - 68 of 68
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10018 hypothetical protein

10018 - hypothetical protein

GO Terms:

GO:0003677, GO:0006355

CD Domains:

Go To Gene Page:

10018
10536 hypothetical protein

10536 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10536
1056 hypothetical protein

1056 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

1056
10732 hypothetical protein

10732 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10732
11028 hypothetical protein

11028 - hypothetical protein

GO Terms:

GO:0000074, GO:0005634

CD Domains:

Go To Gene Page:

11028
11078 zf-C2HC5

11078 - zf-C2HC5

GO Terms:

NA

CD Domains:

Go To Gene Page:

11078
11133 hypothetical protein

11133 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11133
11155 (Tp_HSF_3.5g) HSF_DNA-bind superfamily

11155 - (Tp_HSF_3.5g) HSF_DNA-bind superfamily

GO Terms:

GO:0003700, GO:0005634, GO:0006355, GO:0003677, GO:0000285

CD Domains:

Go To Gene Page:

11155
11169 hypothetical protein

11169 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11169
1131 hypothetical protein

1131 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

1131
11424 hypothetical protein

11424 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11424
11926 PLAC8

11926 - PLAC8

GO Terms:

NA

CD Domains:

Go To Gene Page:

11926
11939 hypothetical protein

11939 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11939
12114 DUF4483 superfamily

12114 - DUF4483 superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

12114
14979 PLN02452

14979 - PLN02452

GO Terms:

GO:0008152, GO:0008483, GO:0006564, GO:0004648

CD Domains:

Go To Gene Page:

14979
17651 HP_PGM_like

17651 - HP_PGM_like

GO Terms:

GO:0003824, GO:0008152, GO:0006096, GO:0016868, GO:0004619, GO:0046537, GO:0046538

CD Domains:

Go To Gene Page:

17651
1771 (DHPS_1) DHDPS

1771 - (DHPS_1) DHDPS

GO Terms:

GO:0008840

CD Domains:

Go To Gene Page:

1771
19601 DUF393

19601 - DUF393

GO Terms:

NA

CD Domains:

Go To Gene Page:

19601
2000 hypothetical protein

2000 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

2000
20723 hypothetical protein

20723 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

20723
21071 hypothetical protein

21071 - hypothetical protein

GO Terms:

GO:0006457

CD Domains:

Go To Gene Page:

21071
21416 hypothetical protein

21416 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

21416
21513 (Tp_HSF_4.7c) HSF_DNA-bind superfamily

21513 - (Tp_HSF_4.7c) HSF_DNA-bind superfamily

GO Terms:

GO:0003700, GO:0005634, GO:0006355, GO:0003677

CD Domains:

Go To Gene Page:

21513
2190 hypothetical protein

2190 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

2190
23408 hypothetical protein

23408 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

23408
23669 hypothetical protein

23669 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

23669
24007 (Tp_bHLH1_PAS) regulator [Rayko]

24007 - (Tp_bHLH1_PAS) regulator [Rayko]

GO Terms:

GO:0004402

CD Domains:

Go To Gene Page:

24007
24205 hypothetical protein

24205 - hypothetical protein

GO Terms:

GO:0006508, GO:0008237, GO:0008270

CD Domains:

Go To Gene Page:

24205
24350 Sun

24350 - Sun

GO Terms:

NA

CD Domains:

Go To Gene Page:

24350
24462 (NTT2) hypothetical protein

24462 - (NTT2) hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24462
25093 hypothetical protein

25093 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25093
25392 KR

25392 - KR

GO Terms:

GO:0005509

CD Domains:

Go To Gene Page:

25392
25908 hypothetical protein

25908 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25908
261531 GlnA

261531 - GlnA

GO Terms:

GO:0004356, GO:0006807

CD Domains:

Go To Gene Page:

261531
262312 CaiB

262312 - CaiB

GO Terms:

GO:0008152, GO:0008111

CD Domains:

Go To Gene Page:

262312
26364 (NTT1) hypothetical protein

26364 - (NTT1) hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

26364
263701 dolichol kinase

263701 - dolichol kinase

GO Terms:

NA

CD Domains:

Go To Gene Page:

263701
264570 EEP superfamily

264570 - EEP superfamily

GO Terms:

GO:0004437

CD Domains:

Go To Gene Page:

264570
264601 GH18_chitinase-like superfamily

264601 - GH18_chitinase-like superfamily

GO Terms:

GO:0008152, GO:0016787, GO:0003824, GO:0005975, GO:0004568, GO:0008843

CD Domains:

Go To Gene Page:

264601
2659 acyl_WS_DGAT

2659 - acyl_WS_DGAT

GO Terms:

NA

CD Domains:

Go To Gene Page:

2659
268601 (Tp_CCCH25) regulator [Rayko]

268601 - (Tp_CCCH25) regulator [Rayko]

GO Terms:

GO:0003676

CD Domains:

Go To Gene Page:

268601
269459 hypothetical protein

269459 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

269459
3103 hypothetical protein

3103 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

3103
31136 Pkinase_Tyr

31136 - Pkinase_Tyr

GO Terms:

GO:0004672, GO:0005524, GO:0006468, GO:0004713, GO:0004674

CD Domains:

Go To Gene Page:

31136
33340 (Tp_aureochrome1) PAS_9

33340 - (Tp_aureochrome1) PAS_9

GO Terms:

GO:0004871, GO:0007165, GO:0000155, GO:0000160

CD Domains:

Go To Gene Page:

33340
3405 hypothetical protein

3405 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

3405
34097 (ARCC) AAK_CK

34097 - (ARCC) AAK_CK

GO Terms:

GO:0008652, GO:0006525, GO:0008804

CD Domains:

Go To Gene Page:

34097
34647 ARO8

34647 - ARO8

GO Terms:

NA

CD Domains:

Go To Gene Page:

34647
4896 hypothetical protein

4896 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

4896
4920 hypothetical protein

4920 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

4920
5296 hypothetical protein

5296 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5296
5655 hypothetical protein

5655 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5655
5669 hypothetical protein

5669 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5669
5878 hypothetical protein

5878 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5878
6287 hypothetical protein

6287 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

6287
6451 hypothetical protein

6451 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

6451
6612 PPOX_FMN_cyano

6612 - PPOX_FMN_cyano

GO Terms:

NA

CD Domains:

Go To Gene Page:

6612
6615 hypothetical protein

6615 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

6615
6771 HMGB-UBF_HMG-box

6771 - HMGB-UBF_HMG-box

GO Terms:

GO:0003677, GO:0006355

CD Domains:

Go To Gene Page:

6771
7233 hypothetical protein

7233 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

7233
7401 hypothetical protein

7401 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

7401
7600 hypothetical protein

7600 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

7600
7821 hypothetical protein

7821 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

7821
7850 hypothetical protein

7850 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

7850
8068 caca2

8068 - caca2

GO Terms:

GO:0016021

CD Domains:

Go To Gene Page:

8068
8464 hypothetical protein

8464 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8464
9260 hypothetical protein

9260 - hypothetical protein

GO Terms:

GO:0004308

CD Domains:

Go To Gene Page:

9260
ThpsCp132 (ccs1) c-type cytochrome biogenensis protein

ThpsCp132 - (ccs1) c-type cytochrome biogenensis protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

ThpsCp132

GO Enrichment

GO ID Go Term p-value q-value Cluster
GO:0006525 arginine metabolism 0.0129708 1 Thaps_bicluster_0034
GO:0005975 carbohydrate metabolism 0.28025 1 Thaps_bicluster_0034
GO:0006564 L-serine biosynthesis 0.0384333 1 Thaps_bicluster_0034
GO:0006355 regulation of transcription, DNA-dependent 0.0403807 1 Thaps_bicluster_0034
GO:0006807 nitrogen compound metabolism 0.0467809 1 Thaps_bicluster_0034
GO:0008652 amino acid biosynthesis 0.0467809 1 Thaps_bicluster_0034
GO:0008152 metabolism 0.094279 1 Thaps_bicluster_0034
GO:0000160 two-component signal transduction system (phosphorelay) 0.111121 1 Thaps_bicluster_0034
GO:0006096 glycolysis 0.14921 1 Thaps_bicluster_0034
GO:0007165 signal transduction 0.16033 1 Thaps_bicluster_0034

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