262646 LRR_RI superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
262646	chr_5	LRR_RI superfamily	2043740	2049147	+	LRR_RI superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7444904	Thaps262646.5, Thaps262646.7, Thaps262646.4, Thaps262646.3, Thaps262646.6, Thaps262646.2, Thaps262646.8, Thaps262646.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0459

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0061	0.42	65 13

Most Highly Correlated Transcripts

22266 hypothetical protein 0.8764	5857 hypothetical protein 0.8738	5915 hypothetical protein 0.8581	7256 hypothetical protein 0.8504	5604 hypothetical protein 0.8446	7545 hypothetical protein 0.8437
22882 PUB 0.8408	10753 hypothetical protein 0.8403	23334 hypothetical protein 0.8389	21861 hypothetical protein 0.8373

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
LRR_RI superfamily		Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue...	-	95.1149	3.85E-21	866 - 1084	superfamily	238064

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Cre01.g045350.t1.2	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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