262856 Tryp_SPcThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
262856	chr_6	Tryp_SPc	936311	937342	-	Tryp_SPc

Synonyms

NCBI ID	Ensembl Genomes exon ID
7445944	Thaps262856.1, Thaps262856.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0098

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0282	0.29	12000 20000

Most Highly Correlated Transcripts

bd790 (bd790) ABCC_MRP_domain2 0.9268	8836 hypothetical protein 0.9092	32760 PDEase_I 0.9025	22062 hypothetical protein 0.8876	34498 VTC1 0.8832	34187 (ACAS2) PRK00174 0.8816
24273 hypothetical protein 0.8815	263489 WD40 0.8793	268761 hypothetical protein 0.8743	5659 hypothetical protein 0.8742

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Tryp_SPc superfamily		Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are...	-	230.241	6.36E-74	84 - 317	superfamily	238113
Tryp_SPc superfamily		Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are...	-	230.241	6.36E-74	84 - 317	superfamily	238113
Tryp_SPc		Trypsin-like serine protease; Many of these are synthesised as inactive precursor zymogens that are...	-	229.102	1.72E-73	83 - 314	multi-dom	214473

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_37254	PHATRDRAFT_37254	Not available	100151	Not available	Cre17.g740600.t2.1	Not available	531672

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0004295 GO:0006508 GO:0004263 -

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