Thaps_bicluster_0282 Residual: 0.29
Thalassiosira pseudonana

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Thaps_bicluster_0282 0.29 Thalassiosira pseudonana
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Displaying 1 - 33 of 33
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10458 hypothetical protein

10458 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10458
11138 hypothetical protein

11138 - hypothetical protein

GO Terms:

GO:0000074

CD Domains:

Go To Gene Page:

11138
11150 hypothetical protein

11150 - hypothetical protein

GO Terms:

GO:0000074

CD Domains:

Go To Gene Page:

11150
11499 hypothetical protein

11499 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11499
11817 hypothetical protein

11817 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11817
1940 hypothetical protein

1940 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

1940
20891 Cyt_b561_FRRS1_like

20891 - Cyt_b561_FRRS1_like

GO Terms:

NA

CD Domains:

Go To Gene Page:

20891
21595 hypothetical protein

21595 - hypothetical protein

GO Terms:

GO:0005515, GO:0004339

CD Domains:

Go To Gene Page:

21595
22062 hypothetical protein

22062 - hypothetical protein

GO Terms:

GO:0004308

CD Domains:

Go To Gene Page:

22062
22281 hypothetical protein

22281 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

22281
22630 hypothetical protein

22630 - hypothetical protein

GO Terms:

GO:0004308

CD Domains:

Go To Gene Page:

22630
22631 hypothetical protein

22631 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

22631
23757 hypothetical protein

23757 - hypothetical protein

GO Terms:

GO:0005524, GO:0015986, GO:0016469, GO:0046933, GO:0046961

CD Domains:

Go To Gene Page:

23757
24312 hypothetical protein

24312 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24312
25038 hypothetical protein

25038 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25038
25408 hypothetical protein

25408 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25408
25838 hypothetical protein

25838 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25838
25913 hypothetical protein

25913 - hypothetical protein

GO Terms:

GO:0000287, GO:0008152, GO:0016462, GO:0004308

CD Domains:

Go To Gene Page:

25913
25921 (TPSIL2) silaffin protein

25921 - (TPSIL2) silaffin protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25921
262856 Tryp_SPc

262856 - Tryp_SPc

GO Terms:

GO:0004295, GO:0006508, GO:0004263

CD Domains:

Go To Gene Page:

262856
3192 NADB_Rossmann superfamily

3192 - NADB_Rossmann superfamily

GO Terms:

GO:0008152, GO:0016491, GO:0004316

CD Domains:

Go To Gene Page:

3192
33337 CAP_ED

33337 - CAP_ED

GO Terms:

GO:0005952, GO:0006468, GO:0008603, GO:0004672, GO:0004682, GO:0004691, GO:0005956, GO:0008605

CD Domains:

Go To Gene Page:

33337
3424 hypothetical protein

3424 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

3424
4495 hypothetical protein

4495 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

4495
4782 hypothetical protein

4782 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

4782
4922 Peptidases_S8_Kp43_protease

4922 - Peptidases_S8_Kp43_protease

GO Terms:

GO:0004289, GO:0006508

CD Domains:

Go To Gene Page:

4922
5439 hypothetical protein

5439 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5439
7900 SCP superfamily

7900 - SCP superfamily

GO Terms:

GO:0005576

CD Domains:

Go To Gene Page:

7900
8086 hypothetical protein

8086 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8086
8273 hypothetical protein

8273 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8273
8927 hypothetical protein

8927 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8927
9432 SCP superfamily

9432 - SCP superfamily

GO Terms:

GO:0005576

CD Domains:

Go To Gene Page:

9432
9434 Tryp_SPc

9434 - Tryp_SPc

GO Terms:

GO:0004295, GO:0006508, GO:0004263, GO:0004293

CD Domains:

Go To Gene Page:

9434
GO ID Go Term p-value q-value Cluster
GO:0000074 regulation of cell cycle 0.00515106 1 Thaps_bicluster_0282
GO:0006508 proteolysis and peptidolysis 0.0134124 1 Thaps_bicluster_0282
GO:0015986 ATP synthesis coupled proton transport 0.0824713 1 Thaps_bicluster_0282
GO:0008152 metabolism 0.171652 1 Thaps_bicluster_0282
GO:0006468 protein amino acid phosphorylation 0.333459 1 Thaps_bicluster_0282
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