26293 malate_synt_A
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
26293 chr_6 malate_synt_A 1221942 1224104 - malate_synt_A

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0011

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0025
 0.38

Most Highly Correlated Transcripts

33353

TRX_family
0.8694

26769

ERG4_ERG24 superfamily
0.868

8414

NA
0.85

261400

NA
0.8454

20405

GRX_GRXh_1_2_like
0.845

36669

TPT
0.8414

26991

GRX_GRXh_1_2_like
0.8402

37934

GRX_PICOT_like
0.836

268908

Trans_IPPS_HH
0.828

30701

PRK05279
0.819

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
malate_synt_A Malate synthase A (MSA), present in some bacteria, plants and fungi. Prokaryotic MSAs tend to be... cl17217 789.913 0 23 - 536 specific 238369
malate_synt superfamily Malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA ,... - 789.913 0 23 - 536 superfamily 266562

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
2848 PHATRDRAFT_54478 PHATRDRAFT_54478 Not available Not available Not available Cre03.g144807.t1.1 AT5G03860.2 552008

KEGG

KEGG description KEGG Pathway
Metabolic pathways map01100

GO Terms

GO:0004474 GO:0006097 GO:0006099 -

GO:0004474

malate synthase activity

Details: 
Catalysis of the reaction: acetyl-CoA + glyoxylate + H(2)O = (S)-malate + CoA + H(+).
GO Category: 
MF

GO:0006097

glyoxylate cycle

Details: 
A modification of the TCA cycle occurring in some plants and microorganisms, in which isocitrate is cleaved to glyoxylate and succinate. Glyoxylate can then react with acetyl-CoA to form malate.
GO Category: 
BP

GO:0006099

tricarboxylic acid cycle

Details: 
A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle.
GO Category: 
BP

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