262960 TM_PBP1_branched-chain-AA_like superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
262960 chr_6 TM_PBP1_branched-chain-AA_like superfamily 1437537 1438933 - TM_PBP1_branched-chain-AA_like superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7442735 Thaps262960.3, Thaps262960.1, Thaps262960.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0203

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0274
 0.39

Most Highly Correlated Transcripts

21681

hypothetical protein
0.9183

13448

Sec1
0.9164

4512

hypothetical protein
0.9128

21229

hypothetical protein
0.9061

261400

NA
0.8979

10856

hypothetical protein
0.8967

4353

O-FucT_like
0.8947

16295

FBPase
0.893

32316

Peptidase_C97
0.8927

4502

hypothetical protein
0.8927

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
TM_PBP1_branched-chain-AA_like superfamily Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC... - 143.976 1.77E-38 26 - 407 superfamily 260432

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_22353 PHATRDRAFT_22353 159148 119964 467182 Cre13.g589800.t1.2 AT1G79610.1 492998

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006814 GO:0006885 GO:0015385 GO:0016021 GO:0015299 -

GO:0006814

sodium ion transport

Details: 
The directed movement of sodium ions (Na+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0006885

regulation of pH

Details: 
Any process involved in the maintenance of an internal equilibrium of hydrogen ions, thereby modulating the internal pH, within an organism or cell.
GO Category: 
BP

GO:0015385

sodium:hydrogen antiporter activity

Details: 
Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Na+(out) + H+(in) = Na+(in) + H+(out).
GO Category: 
MF

GO:0016021

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

GO:0015299

solute:hydrogen antiporter activity

Details: 
Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: solute(out) + H+(in) = solute(in) + H+(out).
GO Category: 
MF

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