262980 DEXDc
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
262980 chr_6 DEXDc 1547667 1552002 + DEXDc

Synonyms

NCBI ID Ensembl Genomes exon ID
7442757 Thaps262980.3, Thaps262980.2, Thaps262980.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0267

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0100
 0.39

Most Highly Correlated Transcripts

8503

DUF2431
0.8865

992

hypothetical protein
0.8806

17271

FtsJ
0.8752

40402

SrmB
0.8717

262303

(Helicase_2) UvrD-helicase
0.8699

35129

(Tp_Myb2R9) PLN03142
0.8679

12259

COG1204
0.8674

1693

hypothetical protein
0.857

268475

C2 superfamily
0.8559

36506

PseudoU_synth superfamily
0.8549

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... cl17251 93.9412 1.22E-21 405 - 563 specific 238005
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 93.9412 1.22E-21 405 - 563 superfamily 266587
HA2 Helicase associated domain (HA2); This presumed domain is about 90 amino acid residues in length.... cl04503 83.4207 1.39E-18 875 - 981 specific 252575
HA2 superfamily Helicase associated domain (HA2); This presumed domain is about 90 amino acid residues in length.... - 83.4207 1.39E-18 875 - 981 superfamily 262181

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005524 GO:0008026 GO:0003676 GO:0004386 -

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0008026

ATP-dependent helicase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the unwinding of a DNA or RNA helix.
GO Category: 
MF

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

GO:0004386

helicase activity

Details: 
Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.
GO Category: 
MF

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