40402 SrmB
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
40402 chr_4 SrmB 1532105 1534066 + SrmB

Synonyms

NCBI ID Ensembl Genomes exon ID
7448852 Thaps40402.2, Thaps40402.3, Thaps40402.4, Thaps40402.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0232

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0151
 0.31

Most Highly Correlated Transcripts

19034

HSP70_NBD
0.9328

18557

HrpA
0.9215

17271

FtsJ
0.9202

12259

COG1204
0.9155

35510

SET
0.8926

14109

SrmB
0.8912

7771

hypothetical protein
0.891

262891

Nucleoporin2
0.8907

262303

(Helicase_2) UvrD-helicase
0.8893

12982

AAA superfamily
0.8835

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 83.4412 4.74E-19 312 - 423 superfamily 238034
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 83.4412 4.74E-19 312 - 423 superfamily 238034
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 145.32 1.50E-40 19 - 251 superfamily 266587
SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription /... - 226.21 4.51E-67 19 - 484 multi-dom 223587

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_28689 PHATRDRAFT_28689 199737 252649 Not available Cre07.g319750.t1.2 AT4G15850.1 258291

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003676 GO:0005524 GO:0008026 GO:0004386 GO:0000810 GO:0004787 GO:0008722 GO:0008758 GO:0008796 GO:0008828 GO:0016462 GO:0016818 GO:0019176 GO:0019177 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0008026

ATP-dependent helicase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the unwinding of a DNA or RNA helix.
GO Category: 
MF

GO:0004386

helicase activity

Details: 
Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.
GO Category: 
MF

GO:0000810

diacylglycerol diphosphate phosphatase activity

Details: 
Catalysis of the reaction: a 1,2-diacyl-sn-glycerol 3-diphosphate + H2O = a 1,2-diacyl-sn-glycerol 3-phosphate + phosphate.
GO Category: 
MF

GO:0004787

thiamine-pyrophosphatase activity

Details: 
Catalysis of the reaction: TDP + H2O = TMP + phosphate.
GO Category: 
MF

GO:0008722

NA

Details: 
NA
GO Category: 
NA

GO:0008758

UDP-2,3-diacylglucosamine hydrolase activity

Details: 
Catalysis of the reaction: H2O + UDP-2,3-bis(3-hydroxymyristoyl)glucosamine = 2,3-bis(3-hydroxymyristoyl)-beta-D-glucosaminyl 1-phosphate + UMP.
GO Category: 
MF

GO:0008796

bis(5'-nucleosyl)-tetraphosphatase activity

Details: 
Catalysis of the hydrolysis of P(1),P(4)-bis(5'-nucleosyl)tetraphosphate into two nucleotides.
GO Category: 
MF

GO:0008828

dATP pyrophosphohydrolase activity

Details: 
Catalysis of the reaction: deoxy-ATP + H2O = dAMP + diphosphate.
GO Category: 
MF

GO:0016462

pyrophosphatase activity

Details: 
Catalysis of the hydrolysis of a pyrophosphate bond between two phosphate groups, leaving one phosphate on each of the two fragments.
GO Category: 
MF

GO:0016818

hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides

Details: 
Catalysis of the hydrolysis of any acid anhydride which contains phosphorus.
GO Category: 
MF

GO:0019176

dihydroneopterin monophosphate phosphatase activity

Details: 
Catalysis of the reaction: dihydroneopterin monophosphate = dihydroneopterin + phosphate.
GO Category: 
MF

GO:0019177

dihydroneopterin triphosphate pyrophosphohydrolase activity

Details: 
Catalysis of the reaction: dihydroneopterin triphosphate = dihydroneopterin phosphate + diphosphate.
GO Category: 
MF

Add comment

Log in to post comments