263096 lysozyme_like superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
263096	chr_7	lysozyme_like superfamily	450041	451851	-	lysozyme_like superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7446214	Thaps263096.2, Thaps263096.3, Thaps263096.1, Thaps263096.4

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0459

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0153	0.31	0.1 0.12

Most Highly Correlated Transcripts

262153 Glyco_18 0.8874	2928 hypothetical protein 0.8434	263097 GH18_chitinase-like superfamily 0.8372	25048 hypothetical protein 0.8243	262148 Cyt-b5 0.8214	268966 GH18_chitinase-like superfamily 0.8206
261660 GH18_chitinase-like superfamily 0.8173	263782 glycoside hydrolase 0.8155	268220 Peptidase_M6 superfamily 0.8125	263184 lysozyme_like superfamily 0.8069

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
lysozyme_like superfamily		lysozyme_like domain. This contains several members including Soluble Lytic Transglycosylases (SLT...	-	127.797	6.40E-34	89 - 299	superfamily	260275

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	AT3G12500.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0004568 GO:0006032 GO:0009613 GO:0016998 -

Add comment

Log in to post comments