263105 (FCL1) FAA1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
263105 chr_7 (FCL1) FAA1 511777 514965 + FAA1

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0003

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0059
 0.44

Most Highly Correlated Transcripts

bd415

(bd415) arom_aa_hydroxylase superfamily
0.9405

bd690

(bd690) NA
0.9105

bd1841

(bd1841) CAP10 superfamily
0.9083

bd885

(bd885) NA
0.8868

bd737

(bd737) NA
0.8859

bd884

(bd884) NA
0.8815

bd643

(bd643) NA
0.8803

bd410

(bd410) HNHc
0.8765

bd1954

(bd1954) NA
0.8752

3275

TLDc
0.8667

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
AFD_class_I superfamily Adenylate forming domain, Class I; This family includes acyl- and aryl-CoA ligases, as well as the... - 383.034 2.50E-123 259 - 872 superfamily 266508
FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] - 422.111 3.59E-136 221 - 878 multi-dom 223953

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 206834 238141 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Peroxisome map04146

GO Terms

GO:0003824 GO:0008152 GO:0004467 -

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0004467

long-chain fatty acid-CoA ligase activity

Details: 
Catalysis of the reaction: ATP + a long-chain carboxylic acid + CoA = AMP + diphosphate + an acyl-CoA; a long-chain fatty acid is a fatty acid with a chain length between C13 and C22.
GO Category: 
MF

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