263215 SCP superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
263215 chr_7 SCP superfamily 1208545 1209173 + SCP superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7447093 Thaps263215.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0384

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0253
 0.34

Most Highly Correlated Transcripts

3192

NADB_Rossmann superfamily
0.9276

22281

hypothetical protein
0.9201

25913

hypothetical protein
0.9167

4495

hypothetical protein
0.9093

5120

hypothetical protein
0.9018

24894

hypothetical protein
0.9006

22701

hypothetical protein
0.8995

23757

hypothetical protein
0.8934

262378

(FRU1) hypothetical protein
0.8927

11499

hypothetical protein
0.8883

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SCP superfamily SCP: SCP-like extracellular protein domain, found in eukaryotes and prokaryotes. This family... - 76.0946 9.60E-18 36 - 174 superfamily 260208

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available AT2G14580.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005576 -

GO:0005576

extracellular region

Details: 
The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
GO Category: 
CC

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