Thaps_bicluster_0253 Residual: 0.34
Thalassiosira pseudonana

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Thaps_bicluster_0253 0.34 Thalassiosira pseudonana
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Displaying 1 - 31 of 31
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10836 hypothetical protein

10836 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10836
11048 hypothetical protein

11048 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11048
11394 hypothetical protein

11394 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11394
11932 hypothetical protein

11932 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11932
11933 hypothetical protein

11933 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11933
1764 hypothetical protein

1764 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

1764
1976 hypothetical protein

1976 - hypothetical protein

GO Terms:

GO:0006457, GO:0031072, GO:0051082

CD Domains:

Go To Gene Page:

1976
21636 hypothetical protein

21636 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

21636
22701 hypothetical protein

22701 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

22701
23603 hypothetical protein

23603 - hypothetical protein

GO Terms:

GO:0008570

CD Domains:

Go To Gene Page:

23603
24561 hypothetical protein

24561 - hypothetical protein

GO Terms:

GO:0005515

CD Domains:

Go To Gene Page:

24561
24894 hypothetical protein

24894 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24894
2574 hypothetical protein

2574 - hypothetical protein

GO Terms:

GO:0009986, GO:0004842

CD Domains:

Go To Gene Page:

2574
262248 proline-rich protein

262248 - proline-rich protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

262248
262249 hypothetical protein

262249 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

262249
262378 (FRU1) hypothetical protein

262378 - (FRU1) hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

262378
263215 SCP superfamily

263215 - SCP superfamily

GO Terms:

GO:0005576

CD Domains:

Go To Gene Page:

263215
2635 RCC1

2635 - RCC1

GO Terms:

GO:0003899, GO:0003900, GO:0003901, GO:0003902

CD Domains:

Go To Gene Page:

2635
263936 Peptidases_S8_Kp43_protease

263936 - Peptidases_S8_Kp43_protease

GO Terms:

GO:0004289, GO:0006508

CD Domains:

Go To Gene Page:

263936
264656 Tryp_SPc

264656 - Tryp_SPc

GO Terms:

GO:0004295, GO:0006508, GO:0004263

CD Domains:

Go To Gene Page:

264656
4229 hypothetical protein

4229 - hypothetical protein

GO Terms:

GO:0003910

CD Domains:

Go To Gene Page:

4229
4668 hypothetical protein

4668 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

4668
4781 hypothetical protein

4781 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

4781
4796 hypothetical protein

4796 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

4796
5120 hypothetical protein

5120 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5120
5167 hypothetical protein

5167 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5167
5357 hypothetical protein

5357 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5357
6944 hypothetical protein

6944 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

6944
8705 hypothetical protein

8705 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8705
9440 hypothetical protein

9440 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9440
9557 hypothetical protein

9557 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9557
GO ID Go Term p-value q-value Cluster
GO:0006508 proteolysis and peptidolysis 0.0101826 1 Thaps_bicluster_0253
GO:0006457 protein folding 0.0784967 1 Thaps_bicluster_0253
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