263343 CitE
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
263343 chr_8 CitE 144113 145735 - CitE

Synonyms

NCBI ID Ensembl Genomes exon ID
7443456 Thaps263343.2, Thaps263343.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0405

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0243
 0.36

Most Highly Correlated Transcripts

bd721

(bd721) NA
0.8474

6568

PLPDE_IV superfamily
0.8395

268335

ELFV_dehydrog
0.8182

bd1941

(bd1941) NA
0.8166

34900

PLN02658
0.813

268867

Peptidase_S28 superfamily
0.8121

1765

hypothetical protein
0.8068

21712

APG9 superfamily
0.8064

3043

HA
0.8062

bd884

(bd884) NA
0.8038

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
FkbR2 FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved... cl00509 208.598 1.74E-64 383 - 528 specific 239535
hot_dog superfamily The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier... - 208.598 1.74E-64 383 - 528 superfamily 260469
CitE Citrate lyase beta subunit [Carbohydrate transport and metabolism] cl17231 226.412 1.71E-69 46 - 340 specific 225184
HpcH_HpaI superfamily HpcH/HpaI aldolase/citrate lyase family; This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic... - 226.412 1.71E-69 46 - 340 superfamily 266573

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0008152 GO:0016491 -

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

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