263371 COG5075
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
263371 chr_8 COG5075 374231 375421 + COG5075

Synonyms

NCBI ID Ensembl Genomes exon ID
7450131 Thaps263371.2, Thaps263371.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0371

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0086
 0.47

Most Highly Correlated Transcripts

4108

hypothetical protein
0.944

bd1765

(bd1765) NA
0.9162

bd1160

(bd1160) Chloroa_b-bind superfamily
0.8905

bd1662

(bd1662) TIGR00367
0.8835

bd1820

(bd1820) Fasciclin
0.8694

bd218

(bd218) Chloroa_b-bind superfamily
0.8633

31912

(PPI1) cyclophilin_ABH_like
0.8621

bd1645

(bd1645) tpt
0.8619

bd672

(bd672) NA
0.8604

bd1380

(bd1380) ycf39
0.8533

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DcpS_C Scavenger mRNA decapping enzyme C-term binding; This family consists of several scavenger mRNA... cl00228 81.479 4.76E-19 258 - 324 specific 256766
HIT_like superfamily HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x... - 81.479 4.76E-19 258 - 324 superfamily 260280
COG5075 Uncharacterized conserved protein [Function unknown] - 131.534 3.98E-35 164 - 362 multi-dom 227407

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 212505 Not available 227266 Cre10.g432650.t1.1 Not available 560555

KEGG

KEGG description KEGG Pathway
RNA degradation map03018

GO Terms

Not available -

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