263427 PLN02372
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
263427 chr_8 PLN02372 841243 842702 - PLN02372

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Thaps263427.2, Thaps263427.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0015

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0160
 0.28

Most Highly Correlated Transcripts

7677

(DDE) diadinoxanthin de-epoxidase
1

bd1645

(bd1645) tpt
0.9624

bd1306

(bd1306) NA
0.9583

270323

hypothetical protein
0.9544

bd1474

(bd1474) phytoene_desat
0.9442

bd1403

(bd1403) NA
0.9431

ThpsCp071

(ycf41) hypothetical protein
0.9409

33205

KefB
0.9406

bd208

(bd208) DUF3529
0.9388

ThpsCp068

(psaL) photosystem I subunit XI
0.9359

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PLN02372 violaxanthin de-epoxidase cl06253 592.201 0 34 - 411 specific 215212
VDE superfamily Violaxanthin de-epoxidase (VDE); This family represents a conserved region approximately 150... - 592.201 0 34 - 411 superfamily 262831

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_51703 PHATRDRAFT_51703 267113 282298 365129 Not available AT1G08550.2 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

Add comment

Log in to post comments