263454 Tryp_SPcThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
263454	chr_8	Tryp_SPc	1050670	1051783	-	Tryp_SPc

Synonyms

NCBI ID	Ensembl Genomes exon ID
7449875	Thaps263454.1, Thaps263454.4, Thaps263454.2, Thaps263454.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0320

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0041	0.50

Most Highly Correlated Transcripts

586 PTZ00018 0.8154	9594 hypothetical protein 0.8103	264590 (Tp_HSF_3.5c) HSF_DNA-bind superfamily 0.8011	263820 Filamin 0.7951	22916 DUF1162 superfamily 0.7935	5694 hypothetical protein 0.7869
32522 rad3 0.7861	263947 SNF2_N 0.7824	262617 (Tp_Myb2R7) MYB DNA binding protein/ transcription factor-like protein 0.7813	5833 hypothetical protein 0.7811

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Tryp_SPc superfamily		Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are...	-	219.84	1.41E-70	34 - 276	superfamily	238113
Tryp_SPc superfamily		Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are...	-	219.84	1.41E-70	34 - 276	superfamily	238113
Tryp_SPc		Trypsin-like serine protease; Many of these are synthesised as inactive precursor zymogens that are...	-	219.086	1.95E-70	33 - 273	multi-dom	214473

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0004295 GO:0006508 GO:0004263 -

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