263542 MFS
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
263542 chr_9 MFS 633417 634934 - MFS

Synonyms

NCBI ID Ensembl Genomes exon ID
7448067 Thaps263542.1, Thaps263542.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0174

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0014
 0.46

Most Highly Correlated Transcripts

4192

hypothetical protein
0.9159

11490

hypothetical protein
0.9084

30701

PRK05279
0.9071

21223

hypothetical protein
0.8899

6243

Macro superfamily
0.8796

35314

GSH_Peroxidase
0.8767

6693

hypothetical protein
0.8763

268257

fabG
0.8746

1215

E1_enzyme_family superfamily
0.8739

25068

hypothetical protein
0.8734

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
MFS superfamily The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that... - 105.088 4.05E-25 110 - 497 superfamily 119392
MFS superfamily The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that... - 105.088 4.05E-25 110 - 497 superfamily 119392
MFS_1 Major Facilitator Superfamily; Major Facilitator Superfamily. - 96.3348 3.97E-22 113 - 464 multi-dom 254360

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 247037 Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0015520 GO:0015904 GO:0016021 GO:0005215 GO:0006810 -

GO:0015520

tetracycline:hydrogen antiporter activity

Details: 
Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: H+(out) + tetracycline(in) = H+(in) + tetracycline(out).
GO Category: 
MF

GO:0015904

tetracycline transport

Details: 
The directed movement of tetracycline into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Tetracycline is a broad spectrum antibiotic that blocks binding of aminoacyl tRNA to the ribosomes of both Gram-positive and Gram-negative organisms (and those of organelles).
GO Category: 
BP

GO:0016021

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

GO:0005215

transporter activity

Details: 
Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
GO Category: 
MF

GO:0006810

transport

Details: 
The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO Category: 
BP

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