Thaps_bicluster_0014 Residual: 0.46
Thalassiosira pseudonana

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Thaps_bicluster_0014 0.46 Thalassiosira pseudonana
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Displaying 1 - 56 of 56
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10172 SpoVK

10172 - SpoVK

GO Terms:

GO:0000166, GO:0017111, GO:0005524

CD Domains:

Go To Gene Page:

10172
16303 S_TKc

16303 - S_TKc

GO Terms:

GO:0004672, GO:0005524, GO:0006468, GO:0004713, GO:0004674

CD Domains:

Go To Gene Page:

16303
16405 SIR2 superfamily

16405 - SIR2 superfamily

GO Terms:

GO:0003677, GO:0005677, GO:0006342, GO:0006355, GO:0004407, GO:0008418, GO:0008759, GO:0009017, GO:0016811, GO:0017159, GO:0018748, GO:0018749, GO:0047419

CD Domains:

Go To Gene Page:

16405
1804 Anoctamin

1804 - Anoctamin

GO Terms:

NA

CD Domains:

Go To Gene Page:

1804
20620 Nucleoporin_C superfamily

20620 - Nucleoporin_C superfamily

GO Terms:

GO:0003700, GO:0005622, GO:0006355

CD Domains:

Go To Gene Page:

20620
21477 hypothetical protein

21477 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

21477
21697 Bac_rhamnosid superfamily

21697 - Bac_rhamnosid superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

21697
23416 SCP superfamily

23416 - SCP superfamily

GO Terms:

GO:0005576

CD Domains:

Go To Gene Page:

23416
23820 NADB_Rossmann superfamily

23820 - NADB_Rossmann superfamily

GO Terms:

GO:0008152, GO:0016491, GO:0008708, GO:0008726, GO:0016614, GO:0018446, GO:0018447, GO:0018448, GO:0018449, GO:0018450, GO:0042469, GO:0045703

CD Domains:

Go To Gene Page:

23820
2400 MFS_1

2400 - MFS_1

GO Terms:

GO:0005215, GO:0006810, GO:0016021

CD Domains:

Go To Gene Page:

2400
24736 EHD

24736 - EHD

GO Terms:

GO:0005509, GO:0004799, GO:0050757

CD Domains:

Go To Gene Page:

24736
24759 LRR_RI superfamily

24759 - LRR_RI superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

24759
2487 hypothetical protein

2487 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

2487
24873 hypothetical protein

24873 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24873
25622 hypothetical protein

25622 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25622
25649 hypothetical protein

25649 - hypothetical protein

GO Terms:

GO:0004308

CD Domains:

Go To Gene Page:

25649
25790 hypothetical protein

25790 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25790
261018 PDEase_I

261018 - PDEase_I

GO Terms:

GO:0004114, GO:0007165, GO:0003824

CD Domains:

Go To Gene Page:

261018
263212 SCP superfamily

263212 - SCP superfamily

GO Terms:

GO:0005576

CD Domains:

Go To Gene Page:

263212
263213 SCP superfamily

263213 - SCP superfamily

GO Terms:

GO:0005576

CD Domains:

Go To Gene Page:

263213
263381 lacZ

263381 - lacZ

GO Terms:

GO:0004565, GO:0005975, GO:0009341, GO:0004553

CD Domains:

Go To Gene Page:

263381
263542 MFS

263542 - MFS

GO Terms:

GO:0015520, GO:0015904, GO:0016021, GO:0005215, GO:0006810

CD Domains:

Go To Gene Page:

263542
263984 SprT-like

263984 - SprT-like

GO Terms:

NA

CD Domains:

Go To Gene Page:

263984
268582 (DHC2) recQ_fam

268582 - (DHC2) recQ_fam

GO Terms:

GO:0005524, GO:0008026, GO:0003676, GO:0004386, GO:0006259, GO:0000810, GO:0004787, GO:0008722, GO:0008758, GO:0008796, GO:0008828, GO:0016462, GO:0016818, GO:0019176, GO:0019177

CD Domains:

Go To Gene Page:

268582
2725 hypothetical protein

2725 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

2725
28350 (PGAM1) HP_PGM_like

28350 - (PGAM1) HP_PGM_like

GO Terms:

GO:0003824, GO:0008152, GO:0006096, GO:0016868, GO:0004619, GO:0046537, GO:0046538

CD Domains:

Go To Gene Page:

28350
31075 PDEase_I

31075 - PDEase_I

GO Terms:

GO:0007242, GO:0009190, GO:0016849

CD Domains:

Go To Gene Page:

31075
31156 Glyoxalase_I

31156 - Glyoxalase_I

GO Terms:

GO:0004462, GO:0005975

CD Domains:

Go To Gene Page:

31156
33941 Mito_carr

33941 - Mito_carr

GO Terms:

GO:0005488, GO:0006810, GO:0016020, GO:0005743

CD Domains:

Go To Gene Page:

33941
34306 Thioredoxin_like superfamily

34306 - Thioredoxin_like superfamily

GO Terms:

GO:0005489, GO:0006118

CD Domains:

Go To Gene Page:

34306
37960 (MYO5) MYSc

37960 - (MYO5) MYSc

GO Terms:

GO:0003774, GO:0005524, GO:0016459, GO:0004351

CD Domains:

Go To Gene Page:

37960
4191 hypothetical protein

4191 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

4191
4830 ADF_cofilin_like

4830 - ADF_cofilin_like

GO Terms:

GO:0003779, GO:0005622

CD Domains:

Go To Gene Page:

4830
4903 hypothetical protein

4903 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

4903
5262 hypothetical protein

5262 - hypothetical protein

GO Terms:

GO:0003677, GO:0006355, GO:0007242

CD Domains:

Go To Gene Page:

5262
5499 hypothetical protein

5499 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5499
5777 PRO8NT

5777 - PRO8NT

GO Terms:

GO:0004842

CD Domains:

Go To Gene Page:

5777
5898 Nucleotid_trans superfamily

5898 - Nucleotid_trans superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

5898
6489 hypothetical protein

6489 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

6489
6876 NADB_Rossmann superfamily

6876 - NADB_Rossmann superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

6876
7460 hypothetical protein

7460 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

7460
7642 PLN02824

7642 - PLN02824

GO Terms:

GO:0003824

CD Domains:

Go To Gene Page:

7642
7876 hypothetical protein

7876 - hypothetical protein

GO Terms:

GO:0016491, GO:0004842

CD Domains:

Go To Gene Page:

7876
8219 hypothetical protein

8219 - hypothetical protein

GO Terms:

GO:0004308

CD Domains:

Go To Gene Page:

8219
8371 hypothetical protein

8371 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8371
9342 hypothetical protein

9342 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9342
9472 hypothetical protein

9472 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9472
9494 DnaJ

9494 - DnaJ

GO Terms:

GO:0006457, GO:0031072, GO:0051082

CD Domains:

Go To Gene Page:

9494
9679 ABD superfamily

9679 - ABD superfamily

GO Terms:

GO:0004476, GO:0005975, GO:0008270

CD Domains:

Go To Gene Page:

9679
9792 hypothetical protein

9792 - hypothetical protein

GO Terms:

GO:0008375, GO:0016020

CD Domains:

Go To Gene Page:

9792
9806 hypothetical protein

9806 - hypothetical protein

GO Terms:

GO:0003677, GO:0006306, GO:0008170

CD Domains:

Go To Gene Page:

9806
9822 hypothetical protein

9822 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9822
993 PROCN superfamily

993 - PROCN superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

993
ThpsCp131 (psbA) photosystem II protein D1

ThpsCp131 - (psbA) photosystem II protein D1

GO Terms:

NA

CD Domains:

Go To Gene Page:

ThpsCp131
GO ID Go Term p-value q-value Cluster
GO:0005975 carbohydrate metabolism 0.00720561 1 Thaps_bicluster_0014
GO:0050757 thymidylate synthase biosynthesis 0.0160425 1 Thaps_bicluster_0014
GO:0007242 intracellular signaling cascade 0.0209687 1 Thaps_bicluster_0014
GO:0015904 tetracycline transport 0.0265997 1 Thaps_bicluster_0014
GO:0006342 chromatin silencing 0.0473882 1 Thaps_bicluster_0014
GO:0006259 DNA metabolism 0.0727741 1 Thaps_bicluster_0014
GO:0006810 transport 0.0741705 1 Thaps_bicluster_0014
GO:0009190 cyclic nucleotide biosynthesis 0.112044 1 Thaps_bicluster_0014
GO:0006306 DNA methylation 0.145089 1 Thaps_bicluster_0014
GO:0006260 DNA replication 0.172469 1 Thaps_bicluster_0014
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